Installation¶

Requirements¶

ToolDog is built with Python 3.6.0 and uses the following Python libraries:

galaxyxml (>=0.4.3)
cwlgen (>=0.2.2)
requests (>=2.13.0)
rdflib (>=4.2.2)
docker (==0.2.1)

Docker is also required in order to perform the code analysis part of the code.

Note

We highly recommend the use of a virtual environment with Python 3.6.0 using virtualenv or conda.

You can use pip to install ToolDog of the latest stable version:

pip3 install tooldog

Note

This is particularly useful when you wish to install a version under development from any branches of the Github repository.

Clone the repository and install ToolDog with the following commands:

git clone https://github.com/bio-tools/ToolDog.git
cd ToolDog
pip3 install .

You can remove ToolDog with the following command:

pip3 uninstall tooldog

Note

This will not uninstall dependencies. To do so you can make use of the pip-autoremove tool pip-autoremove.