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Index
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A
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B
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C
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D
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E
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F
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G
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I
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J
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__enter__() (tooldog.analyse.container.Container method)
__exit__() (tooldog.analyse.container.Container method)
__init__() (tooldog.analyse.code_collector.CodeCollector method)
(tooldog.analyse.container.Container method)
(tooldog.analyse.language_analyzer.LanguageAnalyzer method)
(tooldog.analyse.language_analyzer.PythonAnalyzer method)
(tooldog.analyse.tool_analyzer.ToolAnalyzer method)
(tooldog.annotate.cwl.CwlToolGen method)
(tooldog.annotate.edam_to_galaxy.EdamInfo method)
(tooldog.annotate.edam_to_galaxy.EdamToGalaxy method)
(tooldog.annotate.edam_to_galaxy.GalaxyInfo method)
(tooldog.annotate.galaxy.GalaxyToolGen method)
(tooldog.biotool_model.Biotool method)
(tooldog.biotool_model.Contact method)
(tooldog.biotool_model.Credit method)
(tooldog.biotool_model.Data method)
(tooldog.biotool_model.DataType method)
(tooldog.biotool_model.Documentation method)
(tooldog.biotool_model.Edam method)
(tooldog.biotool_model.Format method)
(tooldog.biotool_model.Function method)
(tooldog.biotool_model.Informations method)
(tooldog.biotool_model.Input method)
(tooldog.biotool_model.Link method)
(tooldog.biotool_model.Operation method)
(tooldog.biotool_model.Output method)
(tooldog.biotool_model.Publication method)
(tooldog.biotool_model.Topic method)
A
add_citation() (tooldog.annotate.galaxy.GalaxyToolGen method)
add_edam_operation() (tooldog.annotate.cwl.CwlToolGen method)
(tooldog.annotate.galaxy.GalaxyToolGen method)
add_edam_topic() (tooldog.annotate.cwl.CwlToolGen method)
(tooldog.annotate.galaxy.GalaxyToolGen method)
add_functions() (tooldog.biotool_model.Biotool method)
add_input_file() (tooldog.annotate.cwl.CwlToolGen method)
(tooldog.annotate.galaxy.GalaxyToolGen method)
add_inputs() (tooldog.biotool_model.Function method)
add_output_file() (tooldog.annotate.cwl.CwlToolGen method)
(tooldog.annotate.galaxy.GalaxyToolGen method)
add_outputs() (tooldog.biotool_model.Function method)
add_publication() (tooldog.annotate.cwl.CwlToolGen method)
add_topics() (tooldog.biotool_model.Biotool method)
analyse() (in module tooldog.main)
(tooldog.analyse.language_analyzer.LanguageAnalyzer method)
(tooldog.analyse.language_analyzer.PythonAnalyzer method)
annotate() (in module tooldog.main)
B
Biotool (class in tooldog.biotool_model)
C
CodeCollector (class in tooldog.analyse.code_collector)
config_logger() (in module tooldog.main)
Contact (class in tooldog.biotool_model)
Container (class in tooldog.analyse.container)
Credit (class in tooldog.biotool_model)
CwlToolGen (class in tooldog.annotate.cwl)
D
Data (class in tooldog.biotool_model)
DataType (class in tooldog.biotool_model)
Documentation (class in tooldog.biotool_model)
E
Edam (class in tooldog.biotool_model)
EdamInfo (class in tooldog.annotate.edam_to_galaxy)
EdamToGalaxy (class in tooldog.annotate.edam_to_galaxy)
exec() (tooldog.analyse.container.Container method)
export_info() (tooldog.annotate.edam_to_galaxy.EdamToGalaxy method)
F
Format (class in tooldog.biotool_model)
Function (class in tooldog.biotool_model)
G
GalaxyInfo (class in tooldog.annotate.edam_to_galaxy)
GalaxyToolGen (class in tooldog.annotate.galaxy)
generate_cwl_doc() (tooldog.biotool_model.Biotool method)
generate_galaxy_help() (tooldog.biotool_model.Biotool method)
generate_hierarchy() (tooldog.annotate.edam_to_galaxy.EdamInfo method)
generate_mapping() (tooldog.annotate.edam_to_galaxy.EdamToGalaxy method)
get_datatype() (tooldog.annotate.edam_to_galaxy.EdamToGalaxy method)
get_edam_id() (tooldog.biotool_model.Edam method)
get_source() (tooldog.analyse.code_collector.CodeCollector method)
(tooldog.analyse.tool_analyzer.ToolAnalyzer method)
I
Informations (class in tooldog.biotool_model)
Input (class in tooldog.biotool_model)
inspect() (tooldog.analyse.container.Container method)
J
json_from_biotools() (in module tooldog.main)
json_from_file() (in module tooldog.main)
json_to_biotool() (in module tooldog.main)
K
kill() (tooldog.analyse.container.Container method)
L
LanguageAnalyzer (class in tooldog.analyse.language_analyzer)
Link (class in tooldog.biotool_model)
load_local_mapping() (tooldog.annotate.edam_to_galaxy.EdamToGalaxy method)
logs() (tooldog.analyse.container.Container method)
O
Operation (class in tooldog.biotool_model)
Output (class in tooldog.biotool_model)
P
parse_arguments() (in module tooldog.main)
Publication (class in tooldog.biotool_model)
pull() (tooldog.analyse.container.Container method)
PythonAnalyzer (class in tooldog.analyse.language_analyzer)
R
remove() (tooldog.analyse.container.Container method)
run() (in module tooldog.main)
(tooldog.analyse.container.Container method)
run_analysis() (tooldog.analyse.tool_analyzer.ToolAnalyzer method)
S
select_root() (tooldog.annotate.edam_to_galaxy.GalaxyInfo method)
set_informations() (tooldog.biotool_model.Biotool method)
set_language() (tooldog.analyse.tool_analyzer.ToolAnalyzer method)
start() (tooldog.analyse.container.Container method)
stop() (tooldog.analyse.container.Container method)
T
ToolAnalyzer (class in tooldog.analyse.tool_analyzer)
tooldog.analyse.code_collector (module)
tooldog.analyse.container (module)
tooldog.analyse.language_analyzer (module)
tooldog.analyse.tool_analyzer (module)
tooldog.annotate.cwl (module)
tooldog.annotate.edam_to_galaxy (module)
tooldog.annotate.galaxy (module)
tooldog.biotool_model (module)
tooldog.main (module)
Topic (class in tooldog.biotool_model)
W
write_cwl() (in module tooldog.main)
(tooldog.annotate.cwl.CwlToolGen method)
write_xml() (in module tooldog.main)
(tooldog.annotate.galaxy.GalaxyToolGen method)
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